PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08324A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family YABBY
Protein Properties Length: 61aa    MW: 6703.86 Da    PI: 7.5118
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08324AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY56.61.2e-1714582266
                      YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66
                               ++vsvP+++++++vtvrCGhCtsllsvnl+ + q l+++shl+ +
  Oropetium_20150105_08324A 14 ILVSVPTNTMLNIVTVRCGHCTSLLSVNLRGSIQSLPVQSHLQVD 58
                               579**************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-141456IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MQLYPSYVHL LRDILVSVPT NTMLNIVTVR CGHCTSLLSV NLRGSIQSLP VQSHLQVDIE  60
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08324A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561769.17e-17protein YABBY 2
RefseqXP_004982272.18e-17protein YABBY 2
SwissprotQ10FZ72e-17YAB2_ORYSJ; Protein YABBY 2
TrEMBLK4AFY25e-16K4AFY2_SETIT; Uncharacterized protein
TrEMBLM8A6G11e-15M8A6G1_TRIUA; Protein YABBY 2
STRINGSi037789m9e-17(Setaria italica)
STRINGTRIUR3_18590-P12e-16(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-10YABBY family protein