PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08323A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family YABBY
Protein Properties Length: 153aa    MW: 17812.5 Da    PI: 10.1473
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08323AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY67.45.5e-214176110149
                      YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdish 149
                                      +r PekrqrvPsaynrfikeei+rikasnPdis 
  Oropetium_20150105_08323A  41 L----HVRAPEKRQRVPSAYNRFIKEEIRRIKASNPDISX 76 
                                3....389******************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-193475IPR006780YABBY protein
SuperFamilySSF470955.68E-54276IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
ESFKAHNXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQDHM LHVRAPEKRQ RVPSAYNRFI  60
KEEIRRIKAS NPDISXXXXX XXXXXXXXXX XXXXXXXPCY HLCNVNWTIR NTSKDWAHFP  120
NIHFGLGPQE NSKKLDEAIG ATARPQKVQG LY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08323A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795818.13e-37protein YABBY 2-like isoform X2
RefseqXP_025795820.12e-37protein YABBY 2-like isoform X4
SwissprotQ10FZ71e-33YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A059PZZ71e-36A0A059PZZ7_9POAL; Axial regulator
STRINGPavir.Ia01130.1.p2e-36(Panicum virgatum)
STRINGSi037789m2e-36(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-20YABBY family protein