PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08060A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 373aa    MW: 40285 Da    PI: 7.8178
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08060AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP162.71.9e-501182812136
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.eaesssssas 83 
                                a +kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LG+dk+skt++WLl+ +k+ai+e++ t + +++sec e++sss s++
  Oropetium_20150105_08060A 118 ASRKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGYDKASKTVQWLLNTSKAAIQEIMTTtDYDASSECvEDGSSSLSVD 201
                                789**********************************************************99967777899999999999999 PP

                        TCP  84 nsssg...........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                 + ++                           ka++s++++k+++ksa+++  l+ke+rakar+rarert+ek+r+++++
  Oropetium_20150105_08060A 202 GKAHNpaeelqqagdpqqekgghgcsegkkpaKARRSTTTPKPPRKSANAHPVLDKETRAKARERARERTKEKHRMRWVK 281
                                6665567778888888889999*********88888888**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-45119277IPR005333Transcription factor, TCP
PROSITE profilePS5136934.876120178IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.593257274IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFPFCDSSPS PMDMPLYQQL LLSPPSPKPD QSISSFYYYP CSPFAAAAEA SSSFHLSYQQ  60
LSSSAVAAAT PPPTVIKTPE LSTMHHPSME RPPPPTLDAG NGQQGAGGGV ISLDAASASR  120
KDRHSKICTA GGMRDRRMRL SLDVARKFFA LQDMLGYDKA SKTVQWLLNT SKAAIQEIMT  180
TTDYDASSEC VEDGSSSLSV DGKAHNPAEE LQQAGDPQQE KGGHGCSEGK KPAKARRSTT  240
TPKPPRKSAN AHPVLDKETR AKARERARER TKEKHRMRWV KLASAIDVEA AGSDRPSSNN  300
LSHSPSMNMA TELEERCSST LNTGGRTQEV SMATEPSDMI LPFGNGGYGG SNYCQQEQWE  360
LGGVVFANSR FY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08060A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982035.11e-152transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI21e-131TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A346M1070.0A0A346M107_CYNDA; Teosinte branched 1
STRINGPavir.Ia00838.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]