PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07979A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ZF-HD
Protein Properties Length: 238aa    MW: 25518.8 Da    PI: 8.0432
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07979AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.89.2e-271363457
                ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                +Y+eC++NhAa+lG++a DGC+E++p+   +g++ a+ CaACgCHRnFHR+  
  Oropetium_20150105_07979A 13 EVYRECMRNHAAKLGTYASDGCCEYTPD---DGHPGAMLCAACGCHRNFHRKAF 63
                               68*************************8...7899****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-211462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-201561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.6721562IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-201561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.27E-17106183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28109184IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-27121182IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEQQQQHQER PREVYRECMR NHAAKLGTYA SDGCCEYTPD DGHPGAMLCA ACGCHRNFHR  60
KAFLDAVSGA TGAASPHPPP PMLPSPGAAG AHGYGMHMTM AAPGGMGDGG AHGGHGSASR  120
RRTRTKFTDE QKERMLRFAE RLGWRMPKRE PGRAPGDDEV ARFCREIGVT RQVFKVWMHN  180
HKAAGGSGGA GAGAAVQTSS STTRXXXXXX XXXXXMSPAM GGDGEEDDEV RGNEMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-191201891780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07979A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3699066e-90AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.11e-100zinc-finger homeodomain protein 11-like
SwissprotA2XLF49e-91ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV59e-91ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6U0851e-101A0A3B6U085_WHEAT; Uncharacterized protein
STRINGTraes_4AL_5659286D11.11e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.13e-26homeobox protein 32