PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07788A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 343aa    MW: 36081 Da    PI: 9.6708
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07788AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.91.5e-3337160289
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                                +g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a  ai +l+ +                    
  Oropetium_20150105_07788A  37 TGGKDRHSKVYTAKGVRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAAAGAIEKLPALdpaafatavaesakvvkqsk 120
                                689*************************************************************55444443333333333222 PP

                        TCP  66 ...ssssaseceaesssssasnsssg..................................k 89 
                                   s                     +                                  +
  Oropetium_20150105_07788A 121 sggS---------------------StsetetskgselslsrsdsrsradrevtvastsaQ 160
                                2221.....................011122211222222222222222222222222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3538184IPR005333Transcription factor, TCP
PROSITE profilePS5136932.4523997IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRGSQQAETA AAAWGQPPAL LPPPQGTASR ICRVRGTGGK DRHSKVYTAK GVRDRRVRLS  60
VPTAIQFYDL QDRLGYDQPS KAIEWLINAA AGAIEKLPAL DPAAFATAVA ESAKVVKQSK  120
SGGSSTSETE TSKGSELSLS RSDSRSRADR EVTVASTSAQ AASFTELLTG MAEHRQAWQQ  180
QQQQKPTSAA EHTEKAGANG LSTTHDFSGA HTGGIKFGDA PPFGMVPAQP FSFPASVEMP  240
HFSLAQDALA AAPVPAGDYN LNFSMSSGFL GAANRGTLQS NSSQSNFSGH HQQLQRLDGP  300
FLFGHSAAAA THPSSENQLT ATAALQLWDG LRHSGVKEKS KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-254498155Putative transcription factor PCF6
5zkt_B2e-254498155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07788A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644443.11e-141transcription factor PCF6
SwissprotQ10CE81e-106PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A3L6TG381e-143A0A3L6TG38_PANMI; Uncharacterized protein
STRINGGRMZM2G089361_P011e-140(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-33TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2