PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07257A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 160aa    MW: 17078 Da    PI: 10.7881
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07257AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.16.9e-1268126260
                                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                                ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l+
  Oropetium_20150105_07257A  68 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAELEQRVSTLQNENNTLR 126
                                78899*************************************************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-1367131IPR004827Basic-leucine zipper domain
PfamPF001701.6E-1068129IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.16269132IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-1272129No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-1672131No hitNo description
CDDcd147049.88E-1672122No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MHVESTAVVE SDEEIRRVPE IGSGASASSG AVGDERAKED GKPAQQVAGA QGQAPATGKK  60
RGRTAGDKEQ NRLKRLLRNR VSAQQARERK KAYLTELEAK AKDLELRNAE LEQRVSTLQN  120
ENNTLRQILK NTTAHAGKRA GGGGAKGGDS GKKHHFTKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766421e-122EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.
GenBankBT0179371e-122BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968380.11e-66PREDICTED: transcription factor HY5-like
SwissprotQ9SM501e-43HY5_SOLLC; Transcription factor HY5
TrEMBLK3XM661e-66K3XM66_SETIT; Uncharacterized protein
STRINGSi002989m3e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.15e-38bZIP family protein