PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06864A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 430aa    MW: 45821.8 Da    PI: 7.1536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06864AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-053103481255
                                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Oropetium_20150105_06864A 310 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 348
                                7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-5308352No hitNo description
SuperFamilySSF474596.02E-11308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8312356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMASSSSSSN LSDHQLQDEL PWPPSSPSSL PFAPALHSAN DQWTQPLLML NSSDELEVLP  60
SSQGQHHSSH HLQAASPVIP PQLSSLLMMQ DLGFEWSNCG SADSAAAMLL MSGQQQDGQN  120
KIKDEPPRRE SLNSRSSCAT TAAYHDIVGG GGGAAGLPAA NLDGTVLPSI NISSRPLQKL  180
CPAPPPLPGD AFEILASSRL CKPLLLRQAS SVLLHNGMPL LRSEHVPYGP PPPEAAVHPQ  240
GPCIDNYKMG PLCVVNGIGG GGHHWSAEND ARHEKTALSS SPAPVPKKPR LESRSSASTT  300
TTVVPSFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA IGYIKFLQDQ VEVLTELLKT  360
NTLSGPYLRS SRSKKPKTRQ RVSPSANGEE QEETRPDLRS RGLCLVPLSC TSYVTNENGV  420
WAPPNFSGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06864A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816405.11e-165transcription factor bHLH110
TrEMBLA0A0A9EPI81e-174A0A0A9EPI8_ARUDO; Uncharacterized protein
STRINGPavir.Ea00834.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-41bHLH family protein