PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05727A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 485aa    MW: 51842.8 Da    PI: 8.9062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05727AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-066991123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C++Cg+ F r  nL+ H r+H
  Oropetium_20150105_05727A 69 YVCEICGQGFQRDQNLQMHRRRH 91
                               9*********************9 PP

2zf-C2H212.60.00042148169223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 C+ C+k +  +s++k H++t+
  Oropetium_20150105_05727A 148 ACERCSKAYAVHSDYKAHLKTC 169
                                6*******************98 PP

3zf-C2H210.80.0015177195523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                dCg++Fsr +++  H+ t+
  Oropetium_20150105_05727A 177 DCGRVFSRVESFIEHQDTC 195
                                9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.05E-66891No hitNo description
SMARTSM003550.00326991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-4138168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.05E-6142167No hitNo description
SMARTSM00355130147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLGFCSPAAG SPPDEAMPEP FRSLEIATTA AATTATATTK KKRRPAGTPD PDAEVVSLSP  60
RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH  120
HDPAHALGDL VGIKKHFRRK HSGHRQWACE RCSKAYAVHS DYKAHLKTCG TRGHSCDCGR  180
VFSRVESFIE HQDTCNAGRT RADLSPACGG VAAAGSLQQA PAPAASLSRT ASSTSPSSDV  240
VISQAAWPGP AAMPSSTAAF HRFDQVXXXX XXXXXXXGGH NLELQLMPPS SRSVGTTAAF  300
CRSPRSPAVS SQGNDAAMHL ALSIGGVSGC AADERGCGVL LAAGRANGDE AREQLRQALA  360
EKAAADEARA QAKRHAELAE QELASAKRMR RQAQVELSRA HALREHAVRQ VNATLLQITC  420
LSCRHKFRAR PVPTAGAMSG AEVACSYDVS SVVTEGGDAE VNEPFFGADG GMRRRQAAKL  480
MDVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17143197357Zinc finger protein JACKDAW
5b3h_F3e-17143197357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KKKRR
23944KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05727A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803598.10.0protein indeterminate-domain 16-like
SwissprotF4IPE31e-130IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A3L6QUU40.0A0A3L6QUU4_PANMI; Protein indeterminate-domain 16-like
STRINGPavir.Ba02057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-106indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]