PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04194A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 329aa    MW: 36023.6 Da    PI: 8.885
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04194AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.4e-3148053128
                        NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Oropetium_20150105_04194A   4 TGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 80 
                                5789**************************************966677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.5911112IPR003441NAC domain
SuperFamilySSF1019417.19E-354112IPR003441NAC domain
PfamPF023651.5E-12880IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LASTGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSDGSK CIGLKKSLVF  60
YKGRAAKGVK TDWMMHEFRL PSLTDPSLPQ KKPLDKTIPP NDSWAICRIF KKTNSTAQRA  120
LSHSWVSPPL SSTNETYIPP SSHATQRGRH SSENTSSSMT DMVSSTIQFT GSCYLSSIGH  180
SSSHNPLSII DSSSMPPASI ALPISGAEQQ NMSVLPAIPL DLPAGMDIAS MVLNATPNSL  240
QNMGRIPTNI DFLQPQQCNS NNSSSLVNRC TVDLPDVGST VNGVPRSINF PFNLQGVLPD  300
DWRMTLPWDS LPCTTEVSTT YQSTKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-33211966171NO APICAL MERISTEM PROTEIN
1ut4_B3e-33211966171NO APICAL MERISTEM PROTEIN
1ut7_A3e-33211966171NO APICAL MERISTEM PROTEIN
1ut7_B3e-33211966171NO APICAL MERISTEM PROTEIN
3swm_A4e-33211969174NAC domain-containing protein 19
3swm_B4e-33211969174NAC domain-containing protein 19
3swm_C4e-33211969174NAC domain-containing protein 19
3swm_D4e-33211969174NAC domain-containing protein 19
3swp_A4e-33211969174NAC domain-containing protein 19
3swp_B4e-33211969174NAC domain-containing protein 19
3swp_C4e-33211969174NAC domain-containing protein 19
3swp_D4e-33211969174NAC domain-containing protein 19
4dul_A3e-33211966171NAC domain-containing protein 19
4dul_B3e-33211966171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1964721e-113AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454285.10.0hypothetical protein SORBIDRAFT_04g028015
SwissprotQ9ZVH01e-73FEZ_ARATH; Protein FEZ
TrEMBLC5XYT20.0C5XYT2_SORBI; Putative uncharacterized protein Sb04g028015
STRINGSb04g028015.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137172629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-72NAC family protein