PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02755A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 667aa    MW: 70620.8 Da    PI: 6.4693
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02755AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10274330155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Oropetium_20150105_02755A 274 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 330
                                57*******************5444.2455535555.7799999*************98 PP

2AP249.88.4e-16373424155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Oropetium_20150105_02755A 373 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 424
                                89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.30E-15274340No hitNo description
SuperFamilySSF541714.97E-14274339IPR016177DNA-binding domain
PfamPF008473.6E-8274330IPR001471AP2/ERF domain
PROSITE profilePS5103217.108275338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-11275338IPR001471AP2/ERF domain
SMARTSM003801.1E-21275344IPR001471AP2/ERF domain
PRINTSPR003673.4E-6276287IPR001471AP2/ERF domain
CDDcd000189.29E-24373434No hitNo description
PfamPF008473.0E-10373424IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-18373434IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-18374433IPR001471AP2/ERF domain
SMARTSM003808.1E-34374438IPR001471AP2/ERF domain
PROSITE profilePS5103219.467374432IPR001471AP2/ERF domain
PRINTSPR003673.4E-6414434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENAQS NQDTSPAAAI DISGGSDFYG LSTQATSDGH LDHASYGIME  60
AFNRGPQETQ DWNIRGMEYG GGASELSMLV GSSGGGGGSG KRAVEESEPK LEDFLGGNSF  120
VSEQDQSGGY LFSGVPMASS TXXXXXXXXX ELSMIKTWLR NNQVPQSLQP SAPHQPQPEE  180
MSTDASANSF GCTDSLGRNG TVATAGSSQS LALSMSTGSH LPMVVAGGSA SGGAASESTS  240
SENKRASGAM DSPGSGAVEA VPRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE  300
GQSRKGRQGG YDKEDKAARA YDLAALKYWG TTTTTNFPIT NYEKELDEMK HMTRQEYIAY  360
LRRNSSGFSR GASKYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI  420
KFRGLNAVTN FDMSRYDVKS ILESSTLPVG GAARRLKDAV DHPEVAGATI WRADMDGGVI  480
SQLTDAGLAG YASYHHHGGW PTIAFQQPSP LSVHYPYGQP PSRGWCKPEQ DAAVAAAAHS  540
LQDLQQLHLG HNFFQASSSS TVYNGGGGGY QGLGGNSFLM PSSTVVADQG HSSSTANQGS  600
TCSYGGNQEG KLIGYDAMVA SAGGDPYAAA RSGYQFSQGS AASTVSIARA NGYSSNNWSS  660
PFNGMG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02755A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824559.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
SwissprotQ8LSN21e-130BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2T7F8Y80.0A0A2T7F8Y8_9POAL; Uncharacterized protein
STRINGSi016558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-119AP2 family protein