PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02638A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 423aa    MW: 46833.7 Da    PI: 4.8268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02638AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.65.4e-28572011128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                                lp+G++F+P+d +l+ ++L++k+          ++++ + +++  +i++++P++Lp  +k++ + ++fF++ +k+y  g+rk+r
  Oropetium_20150105_02638A  57 LPAGVKFDPSDLQLL-QHLERKIGLGGlephvfIDEFIAtVENDeGINYSHPENLP-GMKKDGSTVHFFHQVSKAYGCGQRKRR 138
                                799************.99****988886666543332232332236**********.67788899******************* PP

                        NAM  77 a..........tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                +           ++ +W++tg++k++++ +g ++g kk+Lv+yk   r  k+e++ Wvmh+y+l
  Oropetium_20150105_02638A 139 KvtacidrivsDENLRWHKTGRSKPIYD-NGVKKGWKKILVLYKTlqRGGKAERAPWVMHQYHL 201
                                6577777766544788************.999***********7533778889*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3442220IPR003441NAC domain
PROSITE profilePS5100529.08557220IPR003441NAC domain
PfamPF023651.8E-1158201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MARYWLTNGR GIAKKIRNAT QCADRQINEL GAEAQMECPN CKHCIDNSDV AVQWPGLPAG  60
VKFDPSDLQL LQHLERKIGL GGLEPHVFID EFIATVENDE GINYSHPENL PGMKKDGSTV  120
HFFHQVSKAY GCGQRKRRKV TACIDRIVSD ENLRWHKTGR SKPIYDNGVK KGWKKILVLY  180
KTLQRGGKAE RAPWVMHQYH LGEEEDEKDG ELVVSKVFYQ TATKHMENAE TEIGDEGPGA  240
CAAGIGPKTP KTNTPQPRRA NNSPCETEQN ASILLDQDEE LTIPIDGPDD DGVGNSSWCT  300
REVPAVAVGE ASRAQPILDE SLLCLEDPAS LNDETLLPLD YPILSQCRNE MLDSNLNAFY  360
GLPDLNGVDL GTPPDLQLSV SLFVPLVLSY LCNKSEHASL FLVLRQDIQF GSQDSIGSWL  420
DW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149204.10.0putative NAC domain transcription factor superfamily protein
RefseqXP_008677272.10.0PREDICTED: ANAC044 isoform X1
SwissprotQ6NQK29e-82NAC8_ARATH; NAC domain-containing protein 8
TrEMBLB6TBS00.0B6TBS0_MAIZE; ANAC044
STRINGGRMZM2G104078_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-78NAC domain containing protein 44