PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01917A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 415aa    MW: 44306.7 Da    PI: 6.7965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01917AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.81.9e-11134190155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Oropetium_20150105_01917A 134 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 190
                                57*******************5444.2455536655.779999**************98 PP

2AP248.42.3e-15233284155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Oropetium_20150105_01917A 233 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 284
                                57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.19E-18134200No hitNo description
PfamPF008476.6E-9134190IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-15134199IPR016177DNA-binding domain
SMARTSM003805.4E-21135204IPR001471AP2/ERF domain
PROSITE profilePS5103217.372135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-12135199IPR001471AP2/ERF domain
PRINTSPR003671.9E-6136147IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-18233294IPR016177DNA-binding domain
PfamPF008474.9E-10233284IPR001471AP2/ERF domain
CDDcd000184.09E-24233294No hitNo description
SMARTSM003802.1E-33234298IPR001471AP2/ERF domain
PROSITE profilePS5103219.348234292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18234292IPR001471AP2/ERF domain
PRINTSPR003671.9E-6274294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDTSHNYPWL NFSLAHHCDL EEQERGAAAE LAAIAGAAPP PKLEDFLGGG NNHQVSGGAA  60
TTAPPAPEMY DSELKFIAAG FLSGAAGPXX XXXXXXXXSP LDQADAKLAL PAAAAAAPAQ  120
EQRKAVDSFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA  180
YDLAALKYWG ATTTTNFPVA EYEKELEEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR  240
HHQHGRWQAR IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FEISRYNVES  300
IISSNLPIGS MSAGGRSTKG LECAASGSPD AAPMPGGEVS TAPTAFSALP VKYDQQQDYL  360
SMLALQHHQQ GNLQGLGFGL YSSGVNLDFA SSGGGGGGGG GALAHCYALS VEFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447241.10.0hypothetical protein SORBIDRAFT_06g031120
SwissprotQ6PQQ31e-130AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLC5Y9G70.0C5Y9G7_SORBI; Putative uncharacterized protein Sb06g031120
STRINGSb06g031120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-122AINTEGUMENTA-like 5