PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01822A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 423aa    MW: 47424.8 Da    PI: 5.8111
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01822AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.1e-11133173441
                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                                 k+ rr+++NReAAr+sR+RKka+i++Le+   k ++Le+e
  Oropetium_20150105_01822A 133 EKVLRRLAQNREAARKSRLRKKAYIQQLETsriKLAQLEQE 173
                                6899************************9722244444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-9126177No hitNo description
SMARTSM003386.0E-8130194IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002132176IPR004827Basic-leucine zipper domain
PfamPF001704.4E-8133173IPR004827Basic-leucine zipper domain
CDDcd147082.04E-22134183No hitNo description
SuperFamilySSF579592.56E-7136179No hitNo description
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
PfamPF141446.0E-31220295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MELYPGYLED HFNIHKLSIG SAASPPEYTT TASAQFAAPV RMGLYERPAP APIGMWSHEP  60
FKVDSGGQGT SACTIMEPDN KFDTEDDYDF LCDLSIPWAH VDELSALLQL EDVPQVALEP  120
TRSTDQETSK PPEKVLRRLA QNREAARKSR LRKKAYIQQL ETSRIKLAQL EQELQRTRQQ  180
GVYANGNLGD SALAFSGSLD AGAAAFEIEY GHWVDEQNRH TAELRNALQG QTSDLELQML  240
VETGLNHYEH LFRIKSMAAH SDVFYIMSGM WKTPAERFFL WIGGFRPSEV LKILRPQLEP  300
LTEPQRMGVC GLQQTSTQAE DALFQGMEKL QQNLTEALTA VVPFVSSEAY TQQMVDAVGK  360
LKELVGFVTQ ADHLRLTTLQ QMHKILTKRQ AARGLLALGD YFQRLRALSQ LWAARPRESA  420
IS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976974.10.0PREDICTED: transcription factor TGA4-like isoform X1
SwissprotQ391621e-133TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A0A9D9I60.0A0A0A9D9I6_ARUDO; Uncharacterized protein
STRINGSi010177m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-126TGACG motif-binding factor 4