PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01219A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 445aa    MW: 48638.9 Da    PI: 5.6484
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01219AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.9e-34230284155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+r+rWtpeLHe Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  Oropetium_20150105_01219A 230 KQRMRWTPELHEGFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 284
                                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.168227287IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-32228286IPR009057Homeodomain-like
SuperFamilySSF466898.96E-18228284IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-25230284IPR006447Myb domain, plants
PfamPF002494.6E-9232283IPR001005SANT/Myb domain
PfamPF143791.6E-25313360IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRKFNLMQSQ NSRVFGAMSS SLPILPNAMK ESFPRPHNPQ HIPMSSQLPD DCIPFSPGAL  60
QSATLHPRDG VVRSSYSGYC ASPHDSESNL GRQSSITSFI PQSSNVEVFQ SQSDNTQGMQ  120
TEAAWFPSSM DVLPGYIDNV AAPDNQIQCG SSDVASNEAA NQNEWWAEIM NDDWKDILDA  180
TATDSQTKTM IQSSNSAASQ PAVNQSASSL SGEICPVASP PNSSNASASK QRMRWTPELH  240
EGFVDAVNQL GGSEKATPKG VLKLMKVDGL TIYHVKSHLQ KYRTARYKPE LSEGTSEKRA  300
TTEELSLDLK TSMDLTEALR LQMEVQKRLH EQLEIQRKLQ LRIEEQGKYL QMMFEKQCKS  360
STEKVQASSS GNAAPDLSHA VNKDSGAAGD QNRTGDKPDI AEPGKGLAHI DFKQKLADTD  420
SNSQAAENDG SNISQEKRRK LQDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-31230288260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01219A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794590.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_025794591.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
SwissprotB8ANX90.0PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A2S3IR130.0A0A2S3IR13_9POAL; Uncharacterized protein
STRINGSi035682m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-72phosphate starvation response 1