PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01206A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 406aa    MW: 43826.4 Da    PI: 8.6678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01206AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-5071531128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.................kvkaeekewyfFskrdk 66 
                                lppGfrFhPtdeel+ +yL++++ ++++++  +i++vdiyk++PwdLp +                 k++ ++kewyfFs+rd+
  Oropetium_20150105_01206A   7 LPPGFRFHPTDEELILHYLRNRAGSSPCPVPPIIADVDIYKFNPWDLPcEyyppeihackdprtattKASYGDKEWYFFSPRDR 90 
                                79****************************999**************95489*****99999988665555999********** PP

                        NAM  67 kyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ky++g r+nra+ sgyWkatg+dk+++s+ +ge vg+kk Lvfy gr pkg+kt+W+mheyrl
  Oropetium_20150105_01206A  91 KYPNGIRPNRAAGSGYWKATGTDKPIHSTaTGEGVGVKKALVFYMGRPPKGTKTNWIMHEYRL 153
                                ***************************9878889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-585186IPR003441NAC domain
PROSITE profilePS5100559.1177186IPR003441NAC domain
PfamPF023653.6E-278153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTNPAMLPPG FRFHPTDEEL ILHYLRNRAG SSPCPVPPII ADVDIYKFNP WDLPCEYYPP  60
EIHACKDPRT ATTKASYGDK EWYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHSTA  120
TGEGVGVKKA LVFYMGRPPK GTKTNWIMHE YRLAADANAG HAYRPMKFRN ASMRLDDWVL  180
CRIYKKTSSH VSSPMAGPPL SDQEQDEPSG FVDETHYAAT SSSAGMILQG TAAFPTMLQA  240
AEQRMPRIPS MSELLSDYPL AHLFDDVGGV HHQDQQQHHA AALLGHPVAS HLLVSNSSSS  300
MSAAGQLLLA ANHASAASTT STAGIIDGGA AGTAKRRRSE ESASALTTTN HHHQTLMLAA  360
KKQPSSNGSS CIGATFQRAN GGSLQAGSLA QLAHPMLLHP NMGMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-67718917168NO APICAL MERISTEM PROTEIN
1ut4_B5e-67718917168NO APICAL MERISTEM PROTEIN
1ut7_A5e-67718917168NO APICAL MERISTEM PROTEIN
1ut7_B5e-67718917168NO APICAL MERISTEM PROTEIN
3swm_A5e-67718920171NAC domain-containing protein 19
3swm_B5e-67718920171NAC domain-containing protein 19
3swm_C5e-67718920171NAC domain-containing protein 19
3swm_D5e-67718920171NAC domain-containing protein 19
3swp_A5e-67718920171NAC domain-containing protein 19
3swp_B5e-67718920171NAC domain-containing protein 19
3swp_C5e-67718920171NAC domain-containing protein 19
3swp_D5e-67718920171NAC domain-containing protein 19
4dul_A5e-67718917168NAC domain-containing protein 19
4dul_B5e-67718917168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280291e-122KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984512.11e-149PREDICTED: NAC domain-containing protein 72-like
SwissprotO492557e-80NAC29_ARATH; NAC transcription factor 29
TrEMBLE5FXA51e-157E5FXA5_BAMEM; NAC transcription factor 1
STRINGSi036303m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-79NAC-like, activated by AP3/PI