PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01150A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 335aa    MW: 37360.1 Da    PI: 8.9442
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01150AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-104991446
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                                k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++L+
  Oropetium_20150105_01150A 49 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 91
                               5899*************************86666666555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-846109IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.2E-84693No hitNo description
PROSITE profilePS502179.2894892IPR004827Basic-leucine zipper domain
PfamPF001702.0E-75091IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.88E-75093No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
PfamPF141447.6E-33132207IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MADASSRTDT LTVLDTDDKD QRLENGQSGA AMASYSSDRS DRSDKPMDQK VLRRLAQNRE  60
AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL  120
EYARWQEEQN KQINELRAAV NAHASDSDLR LIVDGIMAHY DEIFRQKGIA AKADVFHILS  180
GMWKTPAERC FLWLGGFRSS ELLKLLMNHL EPLTEQQTSG LSNLQQSSQQ AEDALSQGME  240
SLQQSLAETL AGSLGTPGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR  300
ILTIRQAARA HLAIHDYFSR LRALSSLWLA RPRE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0554460.0BT055446.1 Zea mays full-length cDNA clone ZM_BFb0202I10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558037.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLI1H6280.0I1H628_BRADI; Uncharacterized protein
STRINGBRADI1G64060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-129bZIP family protein