PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00486A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 59aa    MW: 6619.57 Da    PI: 10.8154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00486AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.5e-133524389
                               S-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                         B3 43 grsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
                               grsW+v+l+   r +++r  ++ GW +F+ +ngL++gD++ F++++  ++
  Oropetium_20150105_00486A  3 GRSWTVNLKRsrRVHGDRSAFKYGWHQFCVDNGLEVGDTCFFRVVEVrKK 52
                               9*******666677777799***********************7755444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.437158IPR003340B3 DNA binding domain
CDDcd100173.88E-9245No hitNo description
SuperFamilySSF1019365.1E-12248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-14248IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-10353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MGGRSWTVNL KRSRRVHGDR SAFKYGWHQF CVDNGLEVGD TCFFRVVEVR KKGGAFVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00486A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.19e-23B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.19e-23B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q261e-18Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID01e-22A0A0A9SID0_ARUDO; Uncharacterized protein
STRINGPavir.Ia04671.1.p3e-23(Panicum virgatum)
STRINGPavir.J22021.1.p6e-25(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]