PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00086A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 599aa    MW: 64591.5 Da    PI: 6.052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00086AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-05487512123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                ++C   +C ++F++k +L +H ++ +
  Oropetium_20150105_00086A 487 FECDidYCRMTFRTKTELSVHKKNiC 512
                                89*******************99866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035523487509IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492510539IPR007087Zinc finger, C2H2
SMARTSM003551.6510534IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280512534IPR007087Zinc finger, C2H2
SuperFamilySSF576672.58E-12521576No hitNo description
Gene3DG3DSA:3.30.160.604.8E-9527560IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219540569IPR007087Zinc finger, C2H2
SMARTSM003550.0038540564IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280542564IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-8561592IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539570592IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MRIRRYAARL LSSSTTNPAS PPAQPAAAWL HASDDDCCAF CDVVHASPQE SPDAVKRKGH  60
IASRVPESDV KTGELVGLAQ GLPASEAKRC KIDRGLPFNE ADAAGMGVAN GGSVVNEADV  120
KLEDARGATL LTKADTNNAS NAGPFVTNDA TIDQELKCGG SLATDAAKPN VTGENSFVNG  180
STSELEVLKV APHPNEVAFD PEVTERVSLE SIAAALQGVT GMEPNVTGGP SVMNESDEEP  240
GVLRAISLVN EACTEPELME GISLTSKTVT VAEVTNTVPE VTRTGSLSSD GAVGPEVTRE  300
ACLVQTTPVP EVTGRASCCA DDDPSSNEAQ HPSFDTIGNV QVEKAGDTVD TAMQSSCFDA  360
ADGDASVSST SNSPVEAKDL TVEGVAHFTP SVSCILDVVA RSIGRSSRTD VICYARRKGK  420
KKLDLLEVKT ENIELDDGVI CNQIEEGPCE RVASRAGSAD VKLADIKREL MDNSATRRVK  480
KMKTDKFECD IDYCRMTFRT KTELSVHKKN ICTVKSCSRH FRSHKYLRRH QSVHNDYMPY  540
RCPWEGCNMA FKWSWDRAEH FQVHAGKKPY KCTTPGCSKI YKFVSDFIRH RRRCKPQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-3748759323129Lysine-specific demethylase REF6
6a58_A3e-3748759323129Lysine-specific demethylase REF6
6a59_A3e-3748759323129Lysine-specific demethylase REF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00086A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057343e-94AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence.
GenBankAK0688033e-94AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
GenBankAP0149593e-94AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-94CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A2S3IU920.0A0A2S3IU92_9POAL; Uncharacterized protein
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-35C2H2 family protein