PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote238035290011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 1031aa    MW: 114473 Da    PI: 4.6174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote238035290011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001229250323
                                   ETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                                   C++C+ +F++k+++ +H+++ H
  Ote238035290011|238035290011 229 CNKCNITFNDKDEFLQHQSSlH 250
                                   ******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-5101148IPR016177DNA-binding domain
SMARTSM003550.045227250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
SMARTSM003550.37272294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328272299IPR007087Zinc finger, C2H2
PROSITE patternPS000280274294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
LAVEVSVVDA SDIDGFPIPS LNEIVARGIV DEEDREVLNS DGVAVDLAAL GAAEHPYKEE  60
IQRRTEGLRT EEELLGFLTG LNGKWGSRRK KRRIVDAGEF GSKLPVGWKL LLSVKKKNGF  120
VWLYCRRYIS PSGLHFVSCK GVSSYLLSLH GVHGTNQHST AQYNDIFTDA DKLIPVPVAI  180
QDGNEIENMV SCAPSPHSDS ATDYHEIQVV VNEGDLDLPE DIIGESLFCN KCNITFNDKD  240
EFLQHQSSLH WINRNKNVAR ITDGVIIKDG KYECQFCHKI FSERHRYNGH VGTHVRFQAR  300
TTGESPESAH PSSLNELPTR DIAMEGPSKS HNPMEVCNSI KNNGSSICSH LNTNDEHFRN  360
LEEASGKISV TVKANDIVTE TSPCSAAEDL FSSKENKSFC EDAYPNDSAM ETIDRSSSLQ  420
DKRLESSLPH NDAADSDMDG CLIDNSAASE KPKQTTVSES RLFDFNDHVE ECLLVNNNKH  480
KNDDSGDQTR NELKLDSQKL AVNGSVFANF GIQENQEKLT VTIKEQSDWD YVPCKNIDTT  540
ESISTSGSEA SKHVKDPTIS LRLIGDDEKA RREDNVPYSS VEYKVDDTLS FGKCEKESSQ  600
ADNDDGLKRH EEMEFGMASV IQSWNEQENA SKKGDTEVFT HLLEAPTVQD MSRSQLFADD  660
ESMYRCEKND GGVCKRETKV PELDSLPNFG NGQSSDLFSS SCAQLSTNPI TGKQDXXXXX  720
XXXXXXXXXX XXPVEDNMIT IFNNTMEERK QDPSEVMLVD QPGVSGVPDK TYISNKIYNT  780
PANPFSRIEN AGKHELSLSF GSLHTDLCIQ SNNRVEQESY QANSFDTNSV VPKMYGDPTH  840
SSILSSNMAA NLEQNSPFGY HNLSFHDRTH EPGNSFDVAH PERDWVETER NKLRASSHNF  900
MIGFGNNSLQ TSESVAANCS WRADQDNVYG GCFDANSGPQ IPSSNCLPTC GLAPNKDQES  960
SFNYGVQSEM MRPGRTQPVE YSFMGDECGE AKVFPSVCVW CRNVFFDEAG MQTGAICQSC  1020
SSNIPGHFNV L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100981.10.0uncharacterized protein LOC105179084
TrEMBLA0A4D9BD510.0A0A4D9BD51_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619