PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237869530001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 281aa    MW: 31316.1 Da    PI: 10.1013
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237869530001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.62e-2946137389
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec 73 
                                   g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k  i++l+ +          +       
  Ote237869530001|237869530001  46 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVVDWLLDATKNDIDKLPPLpliptfthshE------- 119
                                   79*************************************************************55553332220....... PP

                           TCP  74 eaesssssasnsssg........k 89 
                                         s+ +++ s         +
  Ote237869530001|237869530001 120 ------SNPHFQPSFshflasnnR 137
                                   ......111111111112222121 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-2747129IPR005333Transcription factor, TCP
PROSITE profilePS5136929.30947105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNSRDKELPL KQEGNPNSNK ITTSSARSQW SSHKNPRIVR VSRSFGGKDR HSKVCTVRGL  60
RDRRIRLSVP TAIQLYDLQD KLGLSQPSKV VDWLLDATKN DIDKLPPLPL IPTFTHSHES  120
NPHFQPSFSH FLASNNRVSP SKQGLKISDQ ENHEGFGGFV AQLSAQNLFP LGNVNQPSFP  180
SMPYNPYFHW DHTNMPFSHV GGAFPLPNQA QDQSQIVLPS SSQLYLPANI PSFPSSYITP  240
SMENVQQNPF FSTALHLSST MKAFPLNVNA KSDTGRSGKD D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087359.14e-95PREDICTED: transcription factor TCP5
TrEMBLA0A068V8433e-69A0A068V843_COFCA; Uncharacterized protein
STRINGPOPTR_0015s06980.14e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499