PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100277890011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 82aa    MW: 9306.29 Da    PI: 9.0049
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100277890011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-091054345
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                  +WT    +++  a +++  +   +W  Iar +g g+++++++ +++
  Ote100277890011|100277890011 10 SWTSKQNKQFEAALAKYDRDtpdRWINIARAVG-GKSAEEVRRHYL 54
                                  7*****************99*************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-13357IPR009057Homeodomain-like
PROSITE profilePS500906.272357IPR017877Myb-like domain
SMARTSM007171.3E-6759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-61058IPR009057Homeodomain-like
PfamPF002491.5E-61054IPR001005SANT/Myb domain
CDDcd001675.03E-51756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASSSMTSSS WTSKQNKQFE AALAKYDRDT PDRWINIARA VGGKSAEEVR RHYLALERDI  60
SNIENDHVPI PNYRAIPNGR ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-25174174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.11e-36protein RADIALIS-like 3
SwissprotF4JVB82e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A4D9BAZ37e-36A0A4D9BAZ3_SALSN; Uncharacterized protein
STRINGMigut.N00487.1.p4e-32(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]