PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100276010011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 108aa    MW: 12209.2 Da    PI: 7.7755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100276010011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.69.2e-29893287
                        DUF260  2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84
                                  Ca Ck+l+r+C + C+lapyfp e++++f++vhk+FG sn++k++++++e+er +++++l+ eA++r+ d v+G+++v +kl 
  Ote100276010011|100276010011  8 CAICKHLGRQCDQTCILAPYFPIERAEEFQCVHKVFGLSNLTKIVSSVEENERATIVETLIIEAKMRLYDRVNGSLRVKKKLD 90
                                  *****************************************************************************999998 PP

                        DUF260 85 qql 87
                                   ++
  Ote100276010011|100276010011 91 CEY 93
                                  765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.926107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-28891IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MDAAAPTCAI CKHLGRQCDQ TCILAPYFPI ERAEEFQCVH KVFGLSNLTK IVSSVEENER  60
ATIVETLIIE AKMRLYDRVN GSLRVKKKLD CEYGERIQLR QATAPLLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846488.12e-26PREDICTED: LOB domain-containing protein 7-like
TrEMBLA0A022RYR63e-26A0A022RYR6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752