PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100270200051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 308aa    MW: 34814.1 Da    PI: 7.5779
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100270200051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.38.2e-321082283109
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........ea 75 
                                   g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++++++s          ++
  Ote100270200051|100270200051 108 GGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQFPQPSLLpilhrpldQS 188
                                   78*************************************************************776663333332222222 PP

                           TCP  76 esssssasnsssg......kaaksaakskksqksaasaln 109
                                   e+++ ++ ++  +      +++++  ++ ++++  a a n
  Ote100270200051|100270200051 189 EKQVLTVRFKDVSagenwtRSSEEGRQGTNQDNACAYAEN 228
                                   2222222222222444443222222233333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-28109190IPR005333Transcription factor, TCP
PROSITE profilePS5136932.019109167IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVNPKPASSF LCEVFSICLG IFSDKSVKSH TSDSECKDMV ASDKPVVTFN HIWASNYEWH  60
KMRETDLTKQ ESCSTSDIAK NGAASSSSTT SWSRHKDPRI IRVSRTFGGK DRHSKVCTVR  120
GLRDRRVRLS VPTAIQLYDL QDRLGLNQPS KVVDWLLNAA KHEIDELPPL QFPQPSLLPI  180
LHRPLDQSEK QVLTVRFKDV SAGENWTRSS EEGRQGTNQD NACAYAENFS ESSLMSSFVR  240
WDPSNLTLSQ SHHQDWHNLS LVQMQSMPYS HSQISAEFDA KKLDFPSSTT VESCSLPDRP  300
MQLNITKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-17114168155Putative transcription factor PCF6
5zkt_B1e-17114168155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099021.16e-66transcription factor TCP5-like
RefseqXP_011099023.16e-66transcription factor TCP5-like
TrEMBLA0A2J6LV192e-58A0A2J6LV19_LACSA; Uncharacterized protein
TrEMBLM0ZLP75e-59M0ZLP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034539e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499