PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100266800001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 66aa    MW: 7421.6 Da    PI: 10.3963
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100266800001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.52.4e-241064154
                        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.r 54
                                  aCaaCk++rrkC++ C+lapyfpa+qpk f+nvh+lFG+snv+++l++l+ ++ r
  Ote100266800001|100266800001 10 ACAACKYQRRKCSPTCPLAPYFPANQPKMFQNVHRLFGVSNVTRTLNNLKSKDfR 64
                                  7***********************************************9887645 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.786966IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-231062IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MTVKGGTTPA CAACKYQRRK CSPTCPLAPY FPANQPKMFQ NVHRLFGVSN VTRTLNNLKS  60
KDFRDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085862.16e-39PREDICTED: protein IAL1-like
SwissprotQ9STS63e-27LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A022R3835e-33A0A022R383_ERYGU; Uncharacterized protein (Fragment)
STRINGPOPTR_0012s07390.12e-25(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375