PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100266090001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 195aa    MW: 22224.1 Da    PI: 11.1678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100266090001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05158180123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k +  +s+ k H++t+
  Ote100266090001|100266090001 158 WKCDKCSKKYAVQSDWKAHQKTC 180
                                   58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.63E-6145188No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVLVLRVDQR PKALAVERLE VARDLKNFGK TRILEIARAR RSLPTRKVMK GVSLLVKSSX  60
XXXXXXLLQN QSNSISTNSH GSSASKQQQP PPKKKRNLPG TPGHNLPWKL RQRTTSEVKK  120
RVYICPEPTC VHHNPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHQKTC  180
GTREYKCDCG TIFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-23154195344Zinc finger protein JACKDAW
5b3h_F6e-23154195344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675074.14e-72protein indeterminate-domain 2-like
SwissprotQ8GYC17e-58IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2C9VTY71e-70A0A2C9VTY7_MANES; Uncharacterized protein
STRINGcassava4.1_030413m2e-71(Manihot esculenta)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]