PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100265300021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 163aa    MW: 17853.1 Da    PI: 8.7599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100265300021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-0687109123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y C+ Cg+ F+++  +  H+r H
  Ote100265300021|100265300021  87 YNCSVCGRKFRTPQAMFGHMRAH 109
                                   89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-685111No hitNo description
PfamPF139125.2E-886111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-486109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78387109IPR007087Zinc finger, C2H2
SMARTSM003554.9E-487109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDTTANSSSS STPPPAAATR AGENIPTXXX XXXSPPVRAL DASTDSAGAE MISETPPSRK  60
RKRDSVAXXX XXXXXXXXXX XETGRTYNCS VCGRKFRTPQ AMFGHMRAHP DRGWTGAHPP  120
PAFRAEEEFA DLRSXXXXXX XXXXXEGKSY RVPDLNKPPP SDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069476.14e-22uncharacterized protein LOC105155299
RefseqXP_011100162.14e-22uncharacterized protein LOC105178395
RefseqXP_011100164.14e-22uncharacterized protein LOC105178398
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713