PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100258130121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 311aa    MW: 36075.4 Da    PI: 5.2924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100258130121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36161062101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+ +ed+++++++sws+ +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100258130121|100258130121  16 FLSKTYDFVEDPDTDQIVSWSRGNNSFVVWDPQAFAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDK---------WEFA 87 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+k+ll++ikr+ 
  Ote100258130121|100258130121  88 NEGFLRGQKHLLKNIKRRX 106
                                   *****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.0E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3414105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3814105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
NGGATREXXX XXXXPFLSKT YDFVEDPDTD QIVSWSRGNN SFVVWDPQAF AINLLPRYFK  60
HNNFSSFVRQ LNTYGFRKVN PDKWEFANEG FLRGQKHLLK NIKRRXXXXX XXXXXSSVVI  120
GGGSNQGLES CVEVGSFGLD GEIERLKRDK QVLMMELVKL RQQQQQTNSH LKQMEQRLRG  180
TEAKQQQTMS FLARAIKNPS FLQQMAQQKG KMKEIEEAIR KKRMKRIDAY GLEPQEFEIG  240
VGVDVDLEFE RLAMSSMDMG EQMLHEEDDH MHDHIHDHNL EGEKSFDEGF WGDLITEALE  300
DEIDNVLLDN P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-271610520120Heat shock factor protein 1
5d5u_B8e-271610529129Heat shock factor protein 1
5d5v_B8e-271610529129Heat shock factor protein 1
5d5v_D8e-271610529129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.11e-127heat stress transcription factor A-2c
SwissprotQ9LUH82e-99HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GL711e-124A0A2G9GL71_9LAMI; Heat shock transcription factor
STRINGGorai.004G076900.11e-108(Gossypium raimondii)
STRINGXP_009798078.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113