PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100258130031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 314aa    MW: 36380.7 Da    PI: 5.2924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100258130031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.1e-36191092101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+ +ed+++++++sws+ +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100258130031|100258130031  19 FLSKTYDFVEDPDTDQIVSWSRGNNSFVVWDPQAFAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDK---------WEFA 90 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+k+ll++ikr+ 
  Ote100258130031|100258130031  91 NEGFLRGQKHLLKNIKRRX 109
                                   *****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.0E-5915108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3817108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.33E-3417108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-201942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3219108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSSNGGATRE XXXXXXXPFL SKTYDFVEDP DTDQIVSWSR GNNSFVVWDP QAFAINLLPR  60
YFKHNNFSSF VRQLNTYGFR KVNPDKWEFA NEGFLRGQKH LLKNIKRRXX XXXXXXXXSS  120
VVIGGGSNQG LESCVEVGSF GLDGEIERLK RDKQVLMMEL VKLRQQQQQT NSHLKQMEQR  180
LRGTEAKQQQ TMSFLARAIK NPSFLQQMAQ QKGKMKEIEE AIRKKRMKRI DAYGLEPQEF  240
EIGVGVDVDL EFERLAMSSM DMGEQMLHEE DDHMHDHIHD HNLEGEKSFD EGFWGDLITE  300
ALEDEIDNVL LDNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-271910820120Heat shock factor protein 1
5d5u_B8e-271910829129Heat shock factor protein 1
5d5v_B8e-271910829129Heat shock factor protein 1
5d5v_D8e-271910829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.11e-128heat stress transcription factor A-2c
SwissprotQ9LUH81e-99HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GL711e-124A0A2G9GL71_9LAMI; Heat shock transcription factor
STRINGGorai.004G076900.11e-108(Gossypium raimondii)
STRINGXP_009798078.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113