PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100253630011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 249aa    MW: 27842.5 Da    PI: 6.509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100253630011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000254466123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C + F++   L  H+++H
  Ote100253630011|100253630011 44 YSCSFCRRDFRSAQALGGHMNVH 66
                                  99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-64170No hitNo description
PROSITE profilePS5015711.1364471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDEARFWMWA KSKPPAYGDS WEEQAFAEDA AGALGGCVWP PRSYSCSFCR RDFRSAQALG  60
GHMNVHRRDR ARLKQSPNPA ADIVPHASNP STSFDPPFSS QMCTLLFSNP NPKLSDAAPI  120
SRVIRVSSPP PAAVVVHKID DRNPPPWSSF LSEKRGRDEE KIEKPESRAE KEDCVTEELS  180
MGLNLVASQW ETNTCSEEEV GSCKRRRIEA KPLSFLVERC LPQPEVLKLC SVSDELDLEL  240
RLGFAPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-123966229superman protein
2l1o_A2e-123966229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094902.11e-99zinc finger protein 10
TrEMBLA0A4D9C7E22e-95A0A4D9C7E2_SALSN; Uncharacterized protein
STRINGMigut.J00299.1.p1e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026