PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100248200001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 154aa    MW: 17045.2 Da    PI: 7.1141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100248200001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05323323
                                  ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                  C+ C k+Fs+   L  H+r+H
  Ote100248200001|100248200001  3 CKLCFKRFSNGKALGAHMRSH 23
                                  ********************9 PP

2zf-C2H212.90.00033102124123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C  C k F++   L  H r+H
  Ote100248200001|100248200001 102 YECAWCFKIFKSAQALGGHKRSH 124
                                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097128IPR007087Zinc finger, C2H2
PROSITE patternPS000280323IPR007087Zinc finger, C2H2
PfamPF139122.1E-6325IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-7323No hitNo description
SuperFamilySSF576671.1E-797124No hitNo description
PfamPF139121.4E-7101126IPR007087Zinc finger, C2H2
SMARTSM003550.14102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDCKLCFKRF SNGKALGAHM RSHYAILPLP PKSGEVNESD DGEGKRISDP EFDESTRPRL  60
KRSKGNDDRE EDGLGSHKAS HLKRIDREKR TEVVGGGEDQ VYECAWCFKI FKSAQALGGH  120
KRSHLQALKF GGDLVDLNLP PAAAVEVVNE EIVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550028.12e-28zinc finger protein ZAT1
TrEMBLA0A4D8Z4M95e-36A0A4D8Z4M9_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480