PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100240880091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 166aa    MW: 18509.1 Da    PI: 10.6063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100240880091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016128150123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Ote100240880091|100240880091 128 WKCDKCSKRYAVQSDWKAHSKIC 150
                                   58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-5115149No hitNo description
Gene3DG3DSA:3.30.160.602.4E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLQGVDENSL SNLTSAISNE ASITSSSNVN EMRGTTPQQQ QLRYNPTLQQ PPPKKRRNLP  60
GNPGTSIPSP LGHNLPWKLK QRNKQEVVRK KVYVCPEPSC VHHDSARALG DLTGIKKHFS  120
RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTRGTVSSPT EPSVMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-13124153332Zinc finger protein JACKDAW
5b3h_F9e-13124153332Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081677.14e-67protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F58e-50IDD7_ARATH; Protein indeterminate-domain 7
SwissprotQ9LRW71e-49IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A4D9AID06e-68A0A4D9AID0_SALSN; Uncharacterized protein
STRINGMigut.A00127.1.p1e-64(Erythranthe guttata)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]