PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231160061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 343aa    MW: 38748.1 Da    PI: 9.1385
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231160061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-173079155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ote100231160061|100231160061 30 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 79
                                  78*******************......55************************998 PP

2AP244.34.4e-14122172155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ k +g
  Ote100231160061|100231160061 122 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDKAAIKCNG 172
                                   89********.7******...5...334336**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-93079IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-163087IPR016177DNA-binding domain
PROSITE profilePS5103217.6093187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-173187IPR001471AP2/ERF domain
SMARTSM003802.9E-313193IPR001471AP2/ERF domain
CDDcd000187.56E-113186No hitNo description
SuperFamilySSF541713.27E-17122181IPR016177DNA-binding domain
PfamPF008471.2E-9122172IPR001471AP2/ERF domain
CDDcd000188.28E-26122182No hitNo description
Gene3DG3DSA:3.30.730.101.1E-16123180IPR001471AP2/ERF domain
PROSITE profilePS5103215.738123180IPR001471AP2/ERF domain
SMARTSM003809.0E-33123186IPR001471AP2/ERF domain
PRINTSPR003672.9E-6124135IPR001471AP2/ERF domain
PRINTSPR003672.9E-6162182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMEQRIIAQE QQQKRQLVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF  60
DTAHAAARAY DRAAIKFRGL DADINFVASD YDEDLKQMKN LTKEEFVHIL RRQSTGFSRG  120
SSKYRGVTLH KCGRWEARMG QLLGKKYIYL GLFDTEIEAA RAYDKAAIKC NGREAVTNFE  180
PSTYEGELSS EAAIRDGENN NLNLNLSIAP PEAHCETHHM EIESFQTHYG SNNLSETNVK  240
SPASSSVAAQ LSHVHGEYPY IWRGVNSRLP PVYTQGAAIE NVVELDSSAS WRRNSPINPH  300
GDHPLPLLST AASSGFATSS AAIHQLPFST RSPDHYGSHY YWR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.11e-142floral homeotic protein APETALA 2
SwissprotQ84TB51e-104AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A4D9AGC61e-156A0A4D9AGC6_SALSN; AP2-like factor, euAP2 lineage
STRINGXP_009606014.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]