PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100229170011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 341aa    MW: 37808.7 Da    PI: 9.9215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100229170011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002399121123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C+k +  +s+ k H +t+
  Ote100229170011|100229170011  99 WKCEKCSKKYAVQSDWKAHSKTC 121
                                   58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-587120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.52E-594143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMSGDVFAVP NSAAAKVFPH ESQTNPNSKP SSKKRRNLPG TPGHNLPWKL KQRANKDQIK  60
KKVYICPEKS CVHHEPGRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT  120
CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEESARIPCV GSNNLNFRDD LSGNPQPNCG  180
FPTSAGIPHL GVGFGAGNSH HQQKPRLSLW LDQANSQLNP IDHHNPDFLM NSSTSSSDIV  240
QMASNNLFGS NPNYANLSLS PLAPPQGMKE EQVSNQANTN TLADSLASLY SDNQNKSPAS  300
XXXXXXXXXX XXXXXXXXXX XXXLKWGRPK AVRHSSATQW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3895164372Zinc finger protein JACKDAW
5b3h_F1e-3895164372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094681.11e-141protein indeterminate-domain 9
TrEMBLA0A2G9GP511e-127A0A2G9GP51_9LAMI; Uncharacterized protein
STRINGXP_009778699.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350