PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100216000021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 236aa    MW: 26429.2 Da    PI: 7.5085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100216000021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.91.4e-37101022103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++ +++isw+e g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Ote100216000021|100216000021  10 FLTKTYHLVDDPASDDVISWNEAGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFA 81 
                                   9***************************************************************9999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   +++Fk+g+kell +i+r+k++
  Ote100216000021|100216000021  82 NENFKRGQKELLAQIRRRKTA 102
                                   ******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-331099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAHRSVPAPF LTKTYHLVDD PASDDVISWN EAGTTFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANENFKRGQK ELLAQIRRRK TATNEKAGAN DNVASPAISG  120
DDLGSSSTSS PDSKNPGSLE TQVSAQLADL SGENEKLRKN NEMLSSELAQ TKKQCDELIA  180
FLTQCVKVAP EQISRIMNLG GAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-27510416125Heat shock factor protein 1
5d5u_B6e-27510125131Heat shock factor protein 1
5d5v_B6e-27510125131Heat shock factor protein 1
5d5v_D6e-27510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099137.11e-121heat shock factor protein HSF24
SwissprotP223352e-98HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2G9GXX11e-124A0A2G9GXX1_9LAMI; Uncharacterized protein
STRINGEOX914071e-111(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]