PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100207650011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 338aa    MW: 37889.4 Da    PI: 8.9922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100207650011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000536385123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  +kC++C+k +  +s+ k H + +
  Ote100207650011|100207650011 63 WKCEKCSKKYAVQSDWKAHCKIC 85
                                  58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MIGHNLPWKL KQRSNKEVKK KVYICPEKSC VHHDPSRALG DLTGIKKXXX XXXXXRKHGE  60
KKWKCEKCSK KYAVQSDWKA HCKICGTREY KCDCGTLFSR KDSFITHRAF CDALAEDSGR  120
FNNPVNFRNE LMTGRMNMDN HYPQFQGMMN NHLNLDLQKP RXXXXXXXXX XXXNNFAAAG  180
GLPELVQMAS QQNQWFTRGQ EETTFNDINS SPSSSIPIQR VLKEDDENKA NLSEAINSLY  240
NNCSNIPPPP MSATALLQKA AQMGSITATN PSVFATAGFG IAPVAEXXXX XPAKQSRLTT  300
ALIDGESGLT RDFLGVGGNE IENRXXXXXS SQNSPPWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3559126370Zinc finger protein JACKDAW
5b3h_F2e-3559126370Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089318.11e-116protein indeterminate-domain 9
TrEMBLA0A4D8ZE251e-111A0A4D8ZE25_SALSN; Uncharacterized protein
TrEMBLA0A4D9ARF51e-111A0A4D9ARF5_SALSN; Uncharacterized protein
STRINGVIT_06s0004g03070.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350