PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100200400171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family FAR1
Protein Properties Length: 421aa    MW: 47297.7 Da    PI: 5.1953
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100200400171genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.63.4e-3180171291
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                   fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka+l vk +++gkw v+ 
  Ote100200400171|100200400171  80 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIHESGKWLVSG 160
                                   ****************************************998888545677889************************** PP

                          FAR1  81 leleHnHelap 91 
                                   +++eHnHel+p
  Ote100200400171|100200400171 161 FVKEHNHELVP 171
                                   *********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2980171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MENGVIEFDI GVGGGDDGID IEPPNDDGEI PDGSSNDANS LGSGSGETSF SHQLYIPEGD  60
HDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RKDGAIIQRS FVCAKEGFRN  120
LNEKRTKDRE IKRPRTVTRV GCKASLSVKI HESGKWLVSG FVKEHNHELV PPDQVHCLRS  180
HRQISGPAKT LIDTRHEKEV KADFDTMNTS PVLRTPSPME KQASEFYTKK LFTRFQEELV  240
STLTFMASKV DDDEEVTSYQ VSKYEEEHKA YHVRFNVLEM RATCSCQMHE AFKFVDEGAE  300
TVESYNVAMA ALAEASNKVA LGIRNEGKTF FAIDQMRDAS VRIGIPVNHC TAEVSGSSAQ  360
QLSEDDMDQK INELSADLER ANRKCEVYRT NLLSLLKDIE DHKQRLSIEV QNIKLSMKDG  420
L
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552571.11e-116protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552572.11e-116protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552573.11e-116protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL83e-79FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A200PS371e-118A0A200PS37_9MAGN; FAR1 DNA binding domain
TrEMBLA0A445LWN71e-118A0A445LWN7_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRINGMigut.D02326.1.p9e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]