PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100191660071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 211aa    MW: 23719.6 Da    PI: 7.7415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100191660071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-06121140120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++C++C+k+F+r  n++ H+
  Ote100191660071|100191660071 121 FSCNICSKTFNRYNNMQMHM 140
                                   89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-6107144No hitNo description
PROSITE profilePS5015710.471121148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-5121140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDFLKFPLFY QHHHETVQCL PLLSRFTEEK DVKEDVDDEK IETVTVALHI GLPDIGEVDV  60
DREKGKRCSF DGGEDECSXX XXXXXXXXXR RRSSNGCNFS DDERRFWIPT PAQILVGPMQ  120
FSCNICSKTF NRYNNMQMHM WGHGSEFRKG PESLRXXXXX RCCGYRATAA PRAARTTSTT  180
PAQSPSRTSA PSRRTTSAST APGPTPAASP A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872292.14e-55zinc finger protein WIP3-like
TrEMBLA0A4D8ZLM02e-56A0A4D8ZLM0_SALSN; Uncharacterized protein
STRINGVIT_06s0080g00270.t012e-48(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133