PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190950201
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 1382aa    MW: 152682 Da    PI: 6.7931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190950201genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008512671292123
                                    EEET..TTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                                    ykC+   C++sF +k +L  H r+ +
  Ote100190950201|100190950201 1267 YKCEvdGCTMSFQTKAELLLHKRNqC 1292
                                    99********************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.5E-142262IPR003349JmjN domain
PROSITE profilePS5118313.7162364IPR003349JmjN domain
PfamPF023752.1E-142457IPR003349JmjN domain
PROSITE profilePS5118432.737302476IPR003347JmjC domain
SMARTSM005583.6E-44302476IPR003347JmjC domain
SuperFamilySSF511977.69E-26302474No hitNo description
PfamPF023734.4E-34335459IPR003347JmjC domain
SMARTSM003557.912671289IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.55E-512891327No hitNo description
PROSITE profilePS5015711.30212901319IPR007087Zinc finger, C2H2
SMARTSM003550.1112901314IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-412911318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012921314IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-913191344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002613201344IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.71813201349IPR007087Zinc finger, C2H2
PROSITE patternPS00028013221344IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-913301372No hitNo description
Gene3DG3DSA:3.30.160.601.4E-913451373IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.28613501381IPR007087Zinc finger, C2H2
SMARTSM003550.4313501376IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013521376IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1382 aa     Download sequence    Send to blast
MNFMAGAMKN VDIPRWLERL PLAPEFRPTD TEFADPIAYI SKIEKEASAF GICKVIPPLP  60
KPSRKYVLHN LNKSLSKCPE LDVDVNLVPF PKTDGGVRNN CDRTVGESRA VFTTRQQELG  120
CEKGKKVKGA VGDQAFGAQK QVWKSGKVYT LEQFEAMAKN FAKSTLGIVK EIDPLLIEAM  180
FWKATSEKPI YVEYANDVPG SGFSEPEGLL RYFDRRXXXX XXXXNSFDRN NLGSSDKKND  240
HVEIVNYVSN TKDSGSQNNP NSCTETTFNS LPSKCMHDEA SFSGRKDMQD SNNEMEGTAG  300
WKLSNSPWNL QVMARSAGSL TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL  360
HMGSPKTWYS VPGEYAFNFE EAIRLHAYGG NPDRLGYLLH VALSLLGEKT TVLSPEVIVA  420
SGIPCCRLVQ YPGEFVVTFP RAYHIGFSHG FNCGEAANFG TSKWLTIAKE AAVRRAAMNY  480
LPMLSHQQLL YLLTMSFISR IPRSLLPGVR SSRLRDRQKE ERELSVKRAF IEDILCENSR  540
LTVLQKHSFY HAVLWDVDSL PSASKESVLC HDADASVLIS AGENSPGKEN NVHDVNDLSN  600
YIGAIGYDLG GDDLAYDFQI ESGTLPCVAC GILGFPFMAI VQPSKAALSN LLNVDALAVS  660
VGSGLTCNTL EDAKYKCESS KKEQNQPTLS LVVQSPLPDC SLSSNHAAVS PEVKIAMGWD  720
ISNAFLRPRV FCLEHAIEIE ELLSSRGGAN VLVICHSDFQ KIKAHAAAIA EEIAVPFSYT  780
EILLGNSAPE DLNLIDAAIE REEQVACSKD WTSLLNINLQ HCVRMKKSCS PSANVQHLPS  840
LGGLFRDATP ISDKSSTKWL SRKLRSTRHQ RRPLQCKPAD SNLTAEKDMK RKKEHQMAKK  900
DIKLIQYSRK RYKVSASAGM HVSDPRVPGE KDDYIAGNTP GVEIDGKKFS GLPMLPFDDG  960
ISESQCEHVI ASSSGGVVEN SFEHHSANSS IASTLVANVE AQTRICLKEK FGGSAHDVKA  1020
VDGVGQKNDG CYSETVGSST DKNGMNHVAE IGIQREEEIV DEVAVARETC DRLAENDCAS  1080
PDDVQSDGSC EIKEASRHDD SSNSSENDGP SPLCDEQMEA ISDQLLVDSE ASKTSSSEGQ  1140
QPVQMGVDGE SNSPLSGEGD TNVGDNGKTG ISSENHVLGV SKTMAQSKPK ARSNRKRELL  1200
GLQLEGQLLA SGFIRSPCEG LRSRAREDSS IRVTDNLEPA PTIKKSRKTT DQSIPRRSKK  1260
ENPKGCYKCE VDGCTMSFQT KAELLLHKRN QCPVDGCRKK FNSHKYAMQH QRVHDDDRPL  1320
KCPWDGCTMS FKWAWARTEH LRVHTGERPY VCKIKGCDLT FRFVSDFSRH RRKTGHYVSP  1380
PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-531267137823134Lysine-specific demethylase REF6
6a58_A2e-531267137823134Lysine-specific demethylase REF6
6a59_A2e-531267137823134Lysine-specific demethylase REF6
6ip0_A2e-51284490136346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-51284490136346Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084321.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A4D8ZAF40.0A0A4D8ZAF4_SALSN; Histone demethylase JARID1
STRINGXP_009589507.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]