PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185550031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 343aa    MW: 37886.1 Da    PI: 8.8995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185550031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000287597123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  +kC++C+k++  +s+ k H + +
  Ote100185550031|100185550031 75 WKCEKCSKRYAVQSDWKAHSKIC 97
                                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-56396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGVDDSLSNL TSAISNEASI NSSSNVNAME GTIPHQQPYN SSLQPPPKKR RNLPGNPDLT  60
GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW KAHSKICGTR EYRCDCGTLF SRRDSFITHR  120
AFCDALAEET SRSAPQTAPN HPLLHHHPFL PLKQETLNFT LPPWLSSDHH IFSPIQETPS  180
NPALFQPPSA AAPSLTSATA LLHKAAQXXX XXXXXXXXXX XXXXXXXXXX XXXXRESSQL  240
VSGGKLANLT GGCMEGGIGG ENIFQENVGM MASTSGFDGF DDSFNGIFSA KRSGIPSFQH  300
DGNFMGLRRX XXXXXXXXGG GDGMTRXXXX XXXXXXRVER IPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3571132364Zinc finger protein JACKDAW
5b3h_F3e-3571132364Zinc finger protein JACKDAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081677.12e-61protein indeterminate-domain 7 isoform X1
RefseqXP_011081679.12e-61protein indeterminate-domain 7 isoform X2
TrEMBLA0A4D9AQA01e-80A0A4D9AQA0_SALSN; Uncharacterized protein