PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168540061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 107aa    MW: 12184.8 Da    PI: 6.5428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168540061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-203889256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                  +y+GVr+++ +g+++AeIrd +    + +r++lg+f+taeeAa a+++a+ k++g+
  Ote100168540061|100168540061 38 RYRGVRRRP-WGKFAAEIRDSTR---QgARIWLGTFDTAEEAALAYDRAAFKMRGA 89
                                  8********.**********322...24**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-313798No hitNo description
SMARTSM003804.0E-3738102IPR001471AP2/ERF domain
PROSITE profilePS5103224.1313896IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-243897IPR016177DNA-binding domain
PfamPF008478.6E-163888IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-323896IPR001471AP2/ERF domain
PRINTSPR003678.5E-123950IPR001471AP2/ERF domain
PRINTSPR003678.5E-126278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MGDRGEREEN LPLNEDDSEE IVLHEMLKEA DALVSKKRYR GVRRRPWGKF AAEIRDSTRQ  60
GARIWLGTFD TAEEAALAYD RAAFKMRGAK AVLNFPPALH ISNLLDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-303796463ATERF1
3gcc_A3e-303796463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096383.11e-45LOW QUALITY PROTEIN: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046814e-42PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A2G9GYS87e-46A0A2G9GYS8_9LAMI; Uncharacterized protein
STRINGXP_010260390.11e-40(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165