PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168150001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 155aa    MW: 17724.2 Da    PI: 10.3088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168150001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-1558108255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y GVr+++ +gr++AeIr p +    +r +lg++  aeeAa a+++a+ kl+g
  Ote100168150001|100168150001  58 RYIGVRRRP-WGRFAAEIRNPEKK--GARMWLGTYERAEEAAVAYDRAAFKLRG 108
                                   699******.**********7443..3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-2258117IPR016177DNA-binding domain
SMARTSM003802.2E-3358122IPR001471AP2/ERF domain
CDDcd000184.10E-2858118No hitNo description
Gene3DG3DSA:3.30.730.101.2E-2958117IPR001471AP2/ERF domain
PfamPF008477.6E-1158108IPR001471AP2/ERF domain
PROSITE profilePS5103223.15658116IPR001471AP2/ERF domain
PRINTSPR003677.4E-125970IPR001471AP2/ERF domain
PRINTSPR003677.4E-1298118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEQKGSEFDR AWLDALQNYL LSDFDLPMNE VPIDHDSDYS SELLSGSPPQ SVGAEWRRYI  60
GVRRRPWGRF AAEIRNPEKK GARMWLGTYE RAEEAAVAYD RAAFKLRGSR ARLNFPHLIN  120
SAVSEPIRVT KRRRIPDILS YSSKPGAKKM KIAVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2754122169ATERF1
3gcc_A1e-2754122169ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.13e-51ethylene-responsive transcription factor 13-like
SwissprotQ8L9K17e-36ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A4D9AC504e-52A0A4D9AC50_SALSN; Ethylene-responsive transcription factor 2
STRINGSolyc01g090310.2.12e-38(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]