PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100150510001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 205aa    MW: 23124.9 Da    PI: 10.5503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100150510001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004113135123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ykC++C+k +  +s+ k H +t+
  Ote100150510001|100150510001 113 YKCEKCSKKYAVHSDWKAHSKTC 135
                                   9******************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-5100134No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5101134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRAKLNWQAD ALLNLRRNRK STAAAAAVDA VRSSAAAAFI QQAAEEPAGK SKQLHRRGHN  60
LPWKLRQKST KEVKRKVYLC PEPSCVHHDP ARALGDLTGI KKHYSRKHGE KKYKCEKCSK  120
KYAVHSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR NLNPPSLSSH  180
LLGLSQQDQM NPSPXXXXXX XXXXS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35109170364Zinc finger protein JACKDAW
5b3h_F2e-35109170364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547771.13e-93protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL32e-79IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A4D8YP473e-95A0A4D8YP47_SALSN; Uncharacterized protein
TrEMBLA0A4D9B9I02e-95A0A4D9B9I0_SALSN; Uncharacterized protein
STRINGMigut.E00578.1.p3e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]