PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100140580011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 253aa    MW: 27808.6 Da    PI: 7.8503
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100140580011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.6e-3981081100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkCa++Cv+apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i
  Ote100140580011|100140580011   8 PCGACKFLRRKCAAECVFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHI 88 
                                   7*************************99***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                   ++lqqq++ l+a+l ++k++
  Ote100140580011|100140580011  89 FALQQQVAYLQAQLLQAKAQ 108
                                   **************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7347109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-378105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MATGTGSPCG ACKFLRRKCA AECVFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVA  60
DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLLQAKAQLA QNMMDHQSSR  120
NADNHQWPNN NNNNNCGAGL MGSSSPPPFA AANQSYYYSS NISPQSSLDS INDGIQEIQS  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FRMMNXXXXX XXXXXXXXXV TIILSSLVGA  240
CVNVVGSVYD RCC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083017.19e-87PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB72e-66LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A068U6E57e-81A0A068U6E5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000251353e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669