PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100126970001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 105aa    MW: 11696.3 Da    PI: 9.0609
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100126970001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.61.1e-3422105486
                        DUF260   4 aCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                    Ck+lrrkC+++Cv+apyf +++ + +fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++l
  Ote100126970001|100126970001  22 XCKFLRRKCVAGCVFAPYFDSDEgAGRFAAVHKVFGASNVSKLLLNIPVHKRPDAVVTVCYEAQARLRDPVYGCVAHIFAL 102
                                   6******************999879******************************************************** PP

                        DUF260  84 qqq 86 
                                   qqq
  Ote100126970001|100126970001 103 QQQ 105
                                   *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.90118105IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3422105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSSSNXXXXX XXXXXXXXXX XXCKFLRRKC VAGCVFAPYF DSDEGAGRFA AVHKVFGASN  60
VSKLLLNIPV HKRPDAVVTV CYEAQARLRD PVYGCVAHIF ALQQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649734.13e-50PREDICTED: LOB domain-containing protein 30-like
RefseqXP_015629413.13e-50PREDICTED: LOB domain-containing protein 30
SwissprotO221311e-49LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D3FG682e-50A0A0D3FG68_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NSE52e-50A0A0E0NSE5_ORYRU; Uncharacterized protein
TrEMBLI1P9F82e-50I1P9F8_ORYGL; Uncharacterized protein
TrEMBLM1AYU82e-50M1AYU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000332535e-50(Solanum tuberosum)
STRINGORGLA03G0100400.15e-50(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669