PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100126110151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 320aa    MW: 35346.1 Da    PI: 10.4116
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100126110151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-1758107155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ote100126110151|100126110151  58 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 107
                                   78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-958107IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1658115IPR016177DNA-binding domain
SMARTSM003801.2E-3259121IPR001471AP2/ERF domain
PROSITE profilePS5103217.8259115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1759115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIRAKYWLNL SXXXXXXXXX XXRGVELGTY KKQFPPNNPA PPPPPAKKSR RGPRSRSSQY  60
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFTIGDYE  120
EDMKQLNNLT KEEFVLVLRR QSNGFARGNS KYRGVTLHKC GSWEPQNGYD KAAIKRNLNR  180
EMKASSGNGG NDSSLDLSLG ISSSSDGSKG SKTTINLQFP LGDRLKVEQH SAPPQELMPN  240
KYWAGIYSGF APNSKELAAR MSSEAVPSNW QWKMASNGAI TSVPVFASSA ASSGFSPATS  300
PYMAPVVPLT FPATAFHSLQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834706.11e-99PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK033e-64RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0G2SJH41e-124A0A0G2SJH4_SALMI; AP10/EREBP Transcription Factors
STRINGMigut.F02018.1.p1e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116