PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100122570091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 343aa    MW: 38958.1 Da    PI: 4.4521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100122570091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS89.55.5e-2813932615214
                          GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                                   ++ +la+ +++ ++e +sp+g++m+++a ++ +    +              +++   +s++ ++a+++++++  + +f+h
  Ote100122570091|100122570091 139 NNGSLAKVIVESIKEKSSPQGKTMEKVAYHMFNSKDDHDEY----------LKQD---SSKNFVTAFNVLYQTLVCGRFAH 206
                                   56689************************998764443222..........3333...37899999*************** PP

                          GRAS  96 ltaNqaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                                    +aN aI e++  + +v Hi+ fdi++G+QWpaL++aL+ ++++   +R+T ++  e    s  e eet++rL++ A+e g
  Ote100122570091|100122570091 207 NAANLAIIESIPDDATVlHIVEFDIGEGIQWPALMEALSRKQRP---VRLTSINLGEDRssSCWEFEETKRRLQDHAREYG 284
                                   ***********9996666*********************99877...9****988666666889***************** PP

                          GRAS 174 vpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrll 214
                                   ++++ +   +++ l++++ ++ + +++E l+ n++++l ++ 
  Ote100122570091|100122570091 285 LRLDVEEKcIEDFLAEMRRRKKNRRRREWLVFNSMVALPHMX 326
                                   **999864245566667777777777***********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.28798343IPR005202Transcription factor GRAS
PfamPF035141.9E-25139326IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMHSEIFLPT SNSPFSAYQN PNDFDDVLFS LFEPSMASSD ELFDHDNVLI PDYDGFETIS  60
RRDIDDICDW IYANHDEGIS SSAEVFASVD EWSPGPSLDS SQDTQIFTNM QINMPGGLDN  120
ESSLLHLSKA YGEAMDGGNN GSLAKVIVES IKEKSSPQGK TMEKVAYHMF NSKDDHDEYL  180
KQDSSKNFVT AFNVLYQTLV CGRFAHNAAN LAIIESIPDD ATVLHIVEFD IGEGIQWPAL  240
MEALSRKQRP VRLTSINLGE DRSSSCWEFE ETKRRLQDHA REYGLRLDVE EKCIEDFLAE  300
MRRRKKNRRR REWLVFNSMV ALPHMXXXXX XXXXGGEAGW SSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095222.13e-96nodulation-signaling pathway 2 protein-like
TrEMBLA0A4D9A2M51e-111A0A4D9A2M5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938