PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100121660071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family FAR1
Protein Properties Length: 510aa    MW: 56226.2 Da    PI: 8.2208
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100121660071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.4e-07871303289
                          FAR1  32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                                   +f+Cs+ g +++                 +C a+l+++ + ++kw+vtk+ ++H+H++
  Ote100121660071|100121660071  87 QFTCSRDGLKKRAG--------------ESCGAMLRIEPRGESKWVVTKFMKDHSHTV 130
                                   55555555555444..............45**************************87 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDAELVGVKE GNMGQHGGLT DDGGDVSNSS EDIDAFGNLL VEDGNFPXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXVYT DCSTFRQFTC SRDGLKKRAG ESCGAMLRIE PRGESKWVVT  120
KFMKDHSHTV VGRSKLRYLR PKRHFAATAN SVAETFQGID TVPSGIMYVS VDGNSVPSES  180
NHVVKNMTAS GLNHTVKNIG SMGFTSGYAN QRRTLVFTVT NVLTLPSHYI LKRWTRNAKS  240
IAADEQCELQ GHESLMTRYN TLCKEAIRFA EDGAISSETY SAAFLSLREG GKKVAGVKKS  300
VGKIAPSSSL VDGHTYDDRR SAINHETTPL LWPHQDEIVR CFNLNDTGVP SQTLSDPNVP  360
CMTPVSLTRD GGHSDNMLIL PCLKSMTWVM ENKNLAPANK VAVISLKLQD HGKTLTGESE  420
VKFSLSRVTL EPMLRSMAYI SEQLSSSANK VAVINLKLQD AETTSGESEV KFQVSKDTLG  480
AMLRSMAYIR EQLSNAIEPK QDHSTKRPRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090244.11e-149protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090246.11e-149protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090247.11e-149protein FAR1-RELATED SEQUENCE 3
RefseqXP_020552429.11e-149protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC91e-115FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLB9S6M50.0B9S6M5_RICCO; Uncharacterized protein
STRINGXP_002521644.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]