PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100119640021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 248aa    MW: 28636.6 Da    PI: 9.852
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100119640021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35221142103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k++e+++d+++++++sw e+ n+f+v+ + ef++++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+
  Ote100119640021|100119640021  22 FLSKTFELVNDSATDHIVSWGEDRNTFIVWRPPEFSRHLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFA 93 
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F+kg+k+ll++i+r+k++
  Ote100119640021|100119640021  94 NEFFRKGEKHLLCEIHRRKTA 114
                                   ******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-3814106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5718111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3319111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVDKSGTILL SLDSQKSVPA PFLSKTFELV NDSATDHIVS WGEDRNTFIV WRPPEFSRHL  60
LPNYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANEFFRKG EKHLLCEIHR RKTAQPQIAI  120
GGHHHYSPLR NNCCGDSWSA LSEDNEILRR NNNLLISELS HMRKLYNDII YFVQNHVKPV  180
APANFHSSSP PQPADMAAAE ETYRTKLFGV PLPSRKRLHS EYNSSTAIKK SRLVIQKDDL  240
GLNLMSMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-211711416123Heat shock factor protein 1
5d5u_B7e-211711325131Heat shock factor protein 1
5d5v_B7e-211711325131Heat shock factor protein 1
5d5v_D7e-211711325131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452467.11e-109PREDICTED: heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6353e-91HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A4D9BD771e-116A0A4D9BD77_SALSN; Heat shock transcription factor, other eukaryote
STRINGGorai.010G020700.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450