PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100119040041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family BBR-BPC
Protein Properties Length: 141aa    MW: 16270.9 Da    PI: 7.295
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100119040041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind50.21.1e-151102196
                     GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkal 67 
                                   mddd+   rn+gyyep   lk  lglqlmss++erd+k+    re+ + + + ++a+++rd          m++  rd+++
  Ote100119040041|100119040041   1 MDDDSL--RNWGYYEPP--LK-GLGLQLMSSLTERDTKPflsgRENPV-MVSANGAFHHRDcvvteppvthMDY-VRDSWI 74 
                                   888866..9********..77.9******************9777777.99***********************.9***** PP

                     GAGA_bind  68 aernkalverdnkllalllvenslasalp 96 
                                   ++r+k l+    +  + +l+e s++ ++p
  Ote100119040041|100119040041  75 NHREKFLHMFPGNPYNSVLAESSAS-HHP 102
                                   **88877655444444444444333.222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.5E-221113IPR010409GAGA-binding transcriptional activator
SMARTSM012265.3E-71138IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDDDSLRNWG YYEPPLKGLG LQLMSSLTER DTKPFLSGRE NPVMVSANGA FHHRDCVVTE  60
PPVTHMDYVR DSWINHREKF LHMFPGNPYN SVLAESSASH HPMQMVQQHQ PEPXXXXXXG  120
QPWKSRLPKR KAGLPRNEEL L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070518.12e-64PREDICTED: protein BASIC PENTACYSTEINE1-like
SwissprotQ9SKD05e-22BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLS8E4345e-53S8E434_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000757033e-49(Solanum tuberosum)