PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100117300041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 149aa    MW: 16269.7 Da    PI: 9.1162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100117300041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-055880123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C++ F ++  L  H++ H
  Ote100117300041|100117300041 58 FSCNYCSRKFYSSQALGGHQNAH 80
                                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.68E-75586No hitNo description
Gene3DG3DSA:3.30.160.607.7E-45684IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6555885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MHVWQKHKIP PXXXXXXXXX XDDLTLDLSL SSKDSDHNQN QELNLFDKNS ESPEPRVFSC  60
NYCSRKFYSS QALGGHQNAH KRERTMAKRA GAAGDAAALG YPSIASLPLY GSSFNRSLGI  120
QKPAIGRVVA EGYQVGSGGA VSLIFGPNF
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082208.11e-41zinc finger protein 1
SwissprotQ424851e-24ZFP1_ARATH; Zinc finger protein 1
TrEMBLA0A2Z7DH582e-35A0A2Z7DH58_9LAMI; Zinc finger protein 1
STRINGXP_008454489.15e-34(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]